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CrystalJev: Calibrated Probabilities for Materials Discovery 2026

arXiv USA
Overview
CrystalJev introduces a System-1 decision layer for atomistic foundation models that uses calibrated probabilities to determine when to escalate candidates to slower, costlier computations. In a prospective test of 2,100 DFT calculations, the system demonstrated that ordering computation by decision value rather than probability recovers most benefits at a tenth of the cost.
In Depth

Key Findings

CrystalJev optimizes the materials discovery funnel by replacing simple energy thresholding with calibrated probabilities and conformal guarantees. The researchers found that across 65 Matbench Discovery models, traditional threshold calls hide cost assumptions. By ordering slower computations based on their value for the decision, the system recovers most of the benefit of these computations at a tenth of the cost. In a registered prospective test involving 2,100 DFT calculations on ionic substitutions, forecasts calibrated on existing data over-stated the stable fraction of new candidates by 0.9–2.2 percentage points due to population shift.

Technical Details

The system operates as a “System-1” decision layer that processes a candidate through a frozen potential once, without relaxation. It utilizes pooled node embeddings and ten physics scalars, including single-point energy, forces, and stresses. Small heads are then trained on a random slice of labeled candidates to answer typed questions (yes/no, ordinal, choice, or compound) with calibrated probabilities. This framework allows for a specific decision rule: if a hit is worth 1 and an attempt costs c, a candidate is worth attempting when the calibrated probability p ≥ c.

Background & Context

Computational materials discovery typically follows a funnel: generative models propose millions of candidates, foundation models relax them, and stable candidates are sent to density-functional theory (DFT) or laboratory testing. Current practices often treat every candidate alike, despite the fact that a relaxation costs approximately thirty forward passes of a potential and DFT costs orders of magnitude more. CrystalJev mimics human cognitive modes, where a fast System 1 settles simple questions and a slow System 2 is engaged only when stakes justify the effort.

Significance & Outlook

By separating the state of a candidate from the question asked and the effort spent, CrystalJev provides a contract on what model outputs mean. The study indicates that while calibration can degrade under distribution shift, adding a few hundred labels from a new pool removes bias more reliably than label-free corrections.

Source: https://arxiv.org/html/2610.06985v2

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